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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0081s0159.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SRS | ||||||||
Protein Properties | Length: 183aa MW: 19084.9 Da PI: 8.218 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 100.1 | 4.1e-31 | 96 | 152 | 5 | 61 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass 61 +++CqdCGnqakkdC h+RCRtCCksrg++C+th+kstWvpa++rrerq +++ Kaladp0081s0159.1.p 96 GSACQDCGNQAKKDCCHRRCRTCCKSRGYECSTHIKSTWVPASRRRERQLLTSSVXX 152 679*********************************************987766544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.1E-27 | 97 | 151 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.3E-26 | 99 | 140 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGMGGLRDLF VVSPTSSFHH SSLNEPSLMA EGLGSGNPAT ALGVGLGVIP LLTAAPCVAD 60 GAGANGRSGG GGIQLWQSQA QNGVNNNNAS VLQTIGSACQ DCGNQAKKDC CHRRCRTCCK 120 SRGYECSTHI KSTWVPASRR RERQLLTSSV XXXXXXCELQ RDVTRADTGA GHVQVCEGDI 180 NK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ847757 | 1e-62 | GQ847757.1 Kalanchoe blossfeldiana cultivar Celine SHI-related protein SRS1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651514.1 | 3e-46 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1, partial | ||||
TrEMBL | A5BRG1 | 1e-46 | A5BRG1_VITVI; Putative uncharacterized protein (Fragment) | ||||
TrEMBL | F6HA24 | 9e-47 | F6HA24_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_06s0009g03450.t01 | 3e-46 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.3 | 2e-30 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0081s0159.1.p |